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#1
for activation link email. Because you not using HTML email format, the language must changing to:
From
COM_COMMUNITY_EMAIL_REGISTRATION_COMPLETED_REQUIRES_ACTIVATION="Hello %1$s,\n\nThank you for registering at %2$s. Your account is created and must be activated before you can log in.\nTo activate the account, click on the following link or copy-&-paste it in your browser:\n\t<a href='%3$s'>%3$s</a>\n\nAfter activation you may login to %4$s using your username and password."
To
COM_COMMUNITY_EMAIL_REGISTRATION_COMPLETED_REQUIRES_ACTIVATION="Hello %1$s,\n\nThank you for registering at %2$s. Your account is created and must be activated before you can log in.\nTo activate the account, click on the following link or copy-&-paste it in your browser:\n\n%3$s\n\nAfter activation you may login to %4$s using your username and password."
#2
the fixes for demographic & statistic.
administrator/components/com_community/models/users.php line 409
From
$query = 'SELECT SUM(CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('Male') . ' THEN 1 ELSE 0 END) as Male, ' . 'SUM(CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('Female') . ' THEN 1 ELSE 0 END) as Female ' .
To
$query = 'SELECT SUM(CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('Male') . ' THEN 1 ELSE 0 END OR CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('COM_COMMUNITY_MALE') . ' THEN 1 ELSE 0 END) as Male, ' . 'SUM(CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('Female') . ' THEN 1 ELSE 0 END OR CASE ' . $db->quoteName('value') . ' WHEN ' . $db->Quote('COM_COMMUNITY_FEMALE') . ' THEN 1 ELSE 0 END) as Female ' .
#3
about htaccess issue you need figure it out with your server support. because I can't inspect more future. Jomsocial support will not go far. Because if something happen with your server, to risky for us. Server configuration/tweak is out off Jomsocial support.