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I don't have the SQL statements at hand, but I searched the the date in old table > than the last converted in new table - there is also a "converted" attribute on the old table you can omit all that is not null on the table.
For me it was } character in a few messages and one had only {{}}{}{{}} with some numbers (smileys I suppose). I change the } to ) - the last one I just wrote "Message could not be converted" in.
Thanks! I actually got Dimas to fix my problem. They will put the fix into the release of the next version. I'm just looking through the backend now to check the conversion progress. I must have hit the cron job about 400 times or so. I really didn't think we had that many messages , so I'm curious :)